Single-cell lineage tracing approaches in hematology research: technical considerations

Joana Carrelha, Dawn S Lin, Alejo E Rodriguez-Fraticelli, Tiago C Luis, Adam C Wilkinson, Nina Cabezas-Wallscheid, Cedric S Tremblay, Simon Haas

Experimental hematology, vol. 89, 2020 Sep, pp. 26--36

An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells

Sarah Bowling, Duluxan Sritharan, Fernando G Osorio, Maximilian Nguyen, Priscilla Cheung, Alejo Rodriguez-Fraticelli, Sachin Patel, Wei-Chien Yuan, Yuko Fujiwara, Bin E Li, Stuart H Orkin, Sahand Hormoz, Fernando D Camargo

Cell, vol. 181, 2020 Jun, pp. 1693--1694

Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis

Alejo E Rodriguez-Fraticelli, Caleb S Weinreb, Shou Wen Wang, Rosa P Migueles, Maja Jankovic, Marc Usart, Allon M Klein, Sally Lowell, Fernando D Camargo

Nature, 2020 Jun

Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors

Killian Hurley, Jun Ding, Carlos Villacorta-Martin, Michael J Herriges, Anjali Jacob, Marall Vedaie, Konstantinos D Alysandratos, Yuliang L Sun, Chieh Lin, Rhiannon B Werder, Jessie Huang, Andrew A Wilson, Aditya Mithal, Gustavo Mostoslavsky, Irene Oglesby, Ignacio S Caballero, Susan H Guttentag, Farida Ahangari, Naftali Kaminski, Alejo Rodriguez-Fraticelli, Fernando Camargo, Ziv Bar-Joseph, Darrell N Kotton

Cell stem cell, vol. 26, 2020 Apr, pp. 593--608.e8

Lineage tracing on transcriptional landscapes links state to fate during differentiation

Caleb S Weinreb, Alejo E Rodriguez-Fraticelli, Fernando D Camargo, Allon M Klein

Science, vol. 367, 2020 Feb, pp. eaaw3381

Micropattern-based platform as a physiologically relevant model to study epithelial morphogenesis and nephrotoxicity

Minerva Bosch-Fortea, Alejo E Rodriguez-Fraticelli, Gonzalo Herranz, Mariam Hachimi, Maria D Barea, Joanne Young, Benoit Ladoux, Fernando Martin-Belmonte

Biomaterials, vol. 218, 2019 Oct, p. 119339

Clonal analysis of lineage fate in native haematopoiesis

Alejo E Rodriguez-Fraticelli, Samuel L Wolock, Caleb S Weinreb, Riccardo Panero, Sachin H Patel, Maja Jankovic, Jianlong Sun, Raffaele A Calogero, Allon M Klein, Fernando D Camargo

Nature, vol. 553, 2018 Jan, pp. 212--216

Developmental regulation of apical endocytosis controls epithelial patterning in vertebrate tubular organs

Alejo E Rodriguez-Fraticelli, Jennifer Bagwell, Minerva Bosch-Fortea, Gaelle Boncompain, Natalia Reglero-Real, Maria J Garcia-Leon, German Andres, Maria L Toribio, Miguel A Alonso, Jaime Millan, Franck Perez, Michel Bagnat, Fernando Martin-Belmonte

Nature cell biology, vol. 17, 2015 Mar, pp. 241--250

Phosphoinositides Coated Beads Binding Assay

Manuel Galvez-Santisteban, Alejo Rodriguez-Fraticelli, Fernando Martin-Belmonte

BIO-PROTOCOL, vol. 4, 2014

Picking up the threads: extracellular matrix signals in epithelial morphogenesis

Alejo E Rodriguez-Fraticelli, Fernando Martin-Belmonte

Current opinion in cell biology, vol. 30, 2014 Oct, pp. 83--90

Methods for analysis of apical lumen trafficking using micropatterned 3D systems

Alejo E Rodriguez-Fraticelli, Fernando Martin-Belmonte

Methods in cell biology, vol. 118, 2013, pp. 105--123

Na+/K+-ATPase is a new interacting partner for the neuronal glycine transporter GlyT2 that downregulates its expression in vitro and in vivo

Jaime de Juan-Sanz, Enrique Nuñez, Lucia Villarejo-Lopez, Daniel Perez-Hernandez, Alejo E Rodriguez-Fraticelli, Beatriz Lopez-Corcuera, Jesus Vazquez, Carmen Aragon

The Journal of neuroscience: the official journal of the Society for Neuroscience, vol. 33, 2013 Aug, pp. 14269--14281

KIF16B delivers for transcytosis

Alejo E Rodriguez-Fraticelli, Manuel Galvez-Santisteban, Fernando Martin-Belmonte

The EMBO journal, vol. 32, 2013 Jul, pp. 2093--2095

Mechanical control of epithelial lumen formation

Alejo E Rodriguez-Fraticelli, Fernando Martin-Belmonte

Small GTPases, vol. 4, 2013 Apr, pp. 136--140

Cell confinement controls centrosome positioning and lumen initiation during epithelial morphogenesis

Alejo E Rodriguez-Fraticelli, Muriel Auzan, Miguel A Alonso, Michel Bornens, Fernando Martin-Belmonte

The Journal of cell biology, vol. 198, 2012 Sep, pp. 1011--1023

Synaptotagmin-like proteins control the formation of a single apical membrane domain in epithelial cells

Manuel Galvez-Santisteban, Alejo E Rodriguez-Fraticelli, David M Bryant, Silvia Vergarajauregui, Takao Yasuda, Inmaculada Bañon-Rodriguez, Ilenia Bernascone, Anirban Datta, Natalie Spivak, Kitty Young, Christiaan L Slim, Paul R Brakeman, Mitsunori Fukuda, Keith E Mostov, Fernando Martin-Belmonte

Nature cell biology, vol. 14, 2012 Aug, pp. 838--849

Divide and polarize: recent advances in the molecular mechanism regulating epithelial tubulogenesis

Alejo E Rodriguez-Fraticelli, Manuel Galvez-Santisteban, Fernando Martin-Belmonte

Current opinion in cell biology, vol. 23, 2011 Oct, pp. 638--646

A molecular network for de novo generation of the apical surface and lumen

David M Bryant, Anirban Datta, Alejo E Rodriguez-Fraticelli, Johan Peranen, Fernando Martin-Belmonte, Keith E Mostov

Nature cell biology, vol. 12, 2010 Nov, pp. 1035--1045

The Cdc42 GEF Intersectin 2 controls mitotic spindle orientation to form the lumen during epithelial morphogenesis

Alejo E Rodriguez-Fraticelli, Silvia Vergarajauregui, Dennis J Eastburn, Anirban Datta, Miguel A Alonso, Keith Mostov, Fernando Martin-Belmonte

The Journal of cell biology, vol. 189, 2010 May, pp. 725--738

The formin INF2 regulates basolateral-to-apical transcytosis and lumen formation in association with Cdc42 and MAL2

Ricardo Madrid, Juan F Aranda, Alejo E Rodriguez-Fraticelli, Leandro Ventimiglia, Laura Andres-Delgado, Mona Shehata, Susan Fanayan, Hamideh Shahheydari, Sergio Gomez, Alberto Jimenez, Fernando Martin-Belmonte, Jennifer A Byrne, Miguel A Alonso

Developmental cell, vol. 18, 2010 May, pp. 814--827

Chapter 3: acquisition of membrane polarity in epithelial tube formation patterns, signaling pathways, molecular mechanisms, and disease

Fernando Martin-Belmonte, Alejo E Rodriguez-Fraticelli

International review of cell and molecular biology, vol. 274, 2009, pp. 129--182

Cell-polarity dynamics controls the mechanism of lumen formation in epithelial morphogenesis

Fernando Martin-Belmonte, Wei Yu, Alejo E Rodriguez-Fraticelli, Andrew J Ewald, Zena Werb, Miguel A Alonso, Keith Mostov

Current biology, vol. 18, 2008 Apr, pp. 507--513